REMMI — Resource for Experimental Magnetic resonance Microstructure Imaging

REMMI is a collection of toolboxes for microstructural imaging on small animal imaging systems. This work is supported by NIH Grant EB019980.

Use or Contribute?

Due to vendor licensing, several of these repositories are private. However, we are happy to provide access to anyone. Email Kevin Harkins or Mark Does for access.

REMMI—Matlab

REMMI-Matlab provides MATLAB routines for reconstruction and processing of quantitative microstructural datasets collected on Bruker and Agilent small animal MRI systems. The repository supports

REMMI-Bruker

Pulse sequences for Bruker Paravision. These sequences were originally developed on PV6.0.1. There is currently partial support for PV6.0.0 and PV360. Note: This is a private repository. Email for access!

Sequences:

REMMI—Agilent

Provides sequences for the Agilent/Varian VNMRJ platform. Note: This is a private repository. Email for access!

Sequences:

sample-holders

3D print files for mouse brain holders. Posted designs can hold 1, 4 or 6 mouse brains with RF coil size ranging from 20-40 mm.

documentation

Manuals for 3D printing, scanning, and sample code for image reconstruction and processing